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computer code data collection illumina nextseq500 sequencer  (Illumina Inc)


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    Illumina Inc computer code data collection illumina nextseq500 sequencer
    Computer Code Data Collection Illumina Nextseq500 Sequencer, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 9692 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/coding+sequence+data/NextSeq+500+to+NextSeq+550+Upgrade/pmc11266617__41467_2024_50251_MOESM5_ESM-11-8-12
    Average 99 stars, based on 9692 article reviews
    computer code data collection illumina nextseq500 sequencer - by Bioz Stars, 2026-10
    99/100 stars

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    Related Articles

    Sequencing:

    Article Title: A universal co-expression gene network and prognostic model for hepatic-biliary-pancreatic cancers identified by integrative analyses.
    Article Snippet: Edited by Simon Rayner Hepatic, biliary and pancreatic cancers are a diverse set of malignancies with poor prognoses.. It is possible that common molecular mechanisms are involved in the carcinogenesis of these cancers.. Here, we identified LINC01537 and seven protein-coding genes by integrative analysis of transcriptomes of mRNAs, microRNAs and long non-coding RNAs from cholangiocarcinoma, hepatocellular carcinoma and pancreatic adenocarcinoma cohorts in TCGA.

    Article Title: Identification of small non-coding RNAs responsive to GUN1 and GUN5 related retrograde signals in Arabidopsis thaliana.
    Article Snippet: ATG accession numbers: GUN1 (AT2G31400), GUN5 (AT5G13630) The raw Illumina sRNA and mRNA/lncRNA sequencing data is deposited in NCBI SRA database with the ID PRJNA557616.

    Article Title: Pan-cancer clinical and molecular analysis of racial disparities
    Article Snippet: TCGA microRNA (miRNA) and long non-coding RNA (lncRNA) sequencing data used in the present study were analyzed on the Illumina HiSeq platform, whereas TCGA DNA methylation data were analyzed on the Illumina HM450k platform.

    Article Title: Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset
    Article Snippet: The synthetic metagenomics dataset was created using ART_Illumina, Q Version 2.5.8 ( ) and a number of EST (expressed sequence tag) and coding sequence data retrieved from the NCBI database (see ).

    Article Title: The Masquelet technique triggers the formation of a network involving LncRNA, circRNA, miRNA, and mRNA during bone repair
    Article Snippet: The whole-transcriptome sequencing data (including lncRNA, circRNA, miRNA, and mRNA) were obtained from two distinct groups using the Illumina Hiseq 4000 platform.

    Article Title: Identification of mRNA-miRNA-lncRNA regulatory network associated with the immune response to Aeromonas salmonicides infection in the black rockfish (Sebastes schlegelii).
    Article Snippet: In aquaculture, Aeromonas salmonicides (A. salmonicida) is a main fish pathogen because of its nearly worldwide distribution, and broad host range.. Recently, an increasing number of evidences have uncovered the roles of mRNA-miRNA-lncRNA network in fish diseases.. In current study, RNA-seq was conducted in the black rockfish spleen following A. salmonicida infection at 0 h (Sp0 or control) and three different post-infection time-points (2 h: Sp2, 12 h: Sp12 and 24 h: Sp24, respectively) to comprehensively identify differentially expressed (DE) mRNAs, miRNAs and lncRNAs.

    Article Title: A universal co‐expression gene network and prognostic model for hepatic–biliary–pancreatic cancers identified by integrative analyses
    Article Snippet: Level 3 RNA‐sequencing (RNA‐seq) count data (mRNA and lncRNA; Illumina HiSeq RNA‐seq platform; Illumina, San Diego, CA, USA) and miRNA‐sequencing (miRNA‐seq) count data (Illumina HiSeq miRNA‐Seq platform), as well as their corresponding clinical phenotypic data and survival information, were obtained from the GDC Data Portal ( https://portal.gdc.cancer.gov ) [ ].

    Article Title: DNMBP-AS1/hsa-miR-30a-5p/PGC1α axis suppresses tumor progression of colorectal cancer by inhibiting PKM2-mediated Warburg effect and enhance anti-PD-1 therapy efficacy.
    Article Snippet: For additional data, we accessed RNA sequence data (lncRNA and mRNA, level 3; Illumina HiSeq RNA-Seq platform), miRNA sequence data (Illumina HiSeq miRNASeq platform), and relevant clinical information of CRC patients from the TCGA database.

    Construct:

    Article Title: A universal co-expression gene network and prognostic model for hepatic-biliary-pancreatic cancers identified by integrative analyses.
    Article Snippet: Edited by Simon Rayner Hepatic, biliary and pancreatic cancers are a diverse set of malignancies with poor prognoses.. It is possible that common molecular mechanisms are involved in the carcinogenesis of these cancers.. Here, we identified LINC01537 and seven protein-coding genes by integrative analysis of transcriptomes of mRNAs, microRNAs and long non-coding RNAs from cholangiocarcinoma, hepatocellular carcinoma and pancreatic adenocarcinoma cohorts in TCGA.

    Article Title: Identification of small non-coding RNAs responsive to GUN1 and GUN5 related retrograde signals in Arabidopsis thaliana.
    Article Snippet: ATG accession numbers: GUN1 (AT2G31400), GUN5 (AT5G13630) The raw Illumina sRNA and mRNA/lncRNA sequencing data is deposited in NCBI SRA database with the ID PRJNA557616.

    Article Title: Pan-cancer clinical and molecular analysis of racial disparities
    Article Snippet: TCGA microRNA (miRNA) and long non-coding RNA (lncRNA) sequencing data used in the present study were analyzed on the Illumina HiSeq platform, whereas TCGA DNA methylation data were analyzed on the Illumina HM450k platform.

    Article Title: Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset
    Article Snippet: The synthetic metagenomics dataset was created using ART_Illumina, Q Version 2.5.8 ( ) and a number of EST (expressed sequence tag) and coding sequence data retrieved from the NCBI database (see ).

    Article Title: The Masquelet technique triggers the formation of a network involving LncRNA, circRNA, miRNA, and mRNA during bone repair
    Article Snippet: The whole-transcriptome sequencing data (including lncRNA, circRNA, miRNA, and mRNA) were obtained from two distinct groups using the Illumina Hiseq 4000 platform.

    Article Title: Identification of mRNA-miRNA-lncRNA regulatory network associated with the immune response to Aeromonas salmonicides infection in the black rockfish (Sebastes schlegelii).
    Article Snippet: In aquaculture, Aeromonas salmonicides (A. salmonicida) is a main fish pathogen because of its nearly worldwide distribution, and broad host range.. Recently, an increasing number of evidences have uncovered the roles of mRNA-miRNA-lncRNA network in fish diseases.. In current study, RNA-seq was conducted in the black rockfish spleen following A. salmonicida infection at 0 h (Sp0 or control) and three different post-infection time-points (2 h: Sp2, 12 h: Sp12 and 24 h: Sp24, respectively) to comprehensively identify differentially expressed (DE) mRNAs, miRNAs and lncRNAs.

    Article Title: A universal co‐expression gene network and prognostic model for hepatic–biliary–pancreatic cancers identified by integrative analyses
    Article Snippet: Level 3 RNA‐sequencing (RNA‐seq) count data (mRNA and lncRNA; Illumina HiSeq RNA‐seq platform; Illumina, San Diego, CA, USA) and miRNA‐sequencing (miRNA‐seq) count data (Illumina HiSeq miRNA‐Seq platform), as well as their corresponding clinical phenotypic data and survival information, were obtained from the GDC Data Portal ( https://portal.gdc.cancer.gov ) [ ].

    Article Title: DNMBP-AS1/hsa-miR-30a-5p/PGC1α axis suppresses tumor progression of colorectal cancer by inhibiting PKM2-mediated Warburg effect and enhance anti-PD-1 therapy efficacy.
    Article Snippet: For additional data, we accessed RNA sequence data (lncRNA and mRNA, level 3; Illumina HiSeq RNA-Seq platform), miRNA sequence data (Illumina HiSeq miRNASeq platform), and relevant clinical information of CRC patients from the TCGA database.

    Infection:

    Article Title: A universal co-expression gene network and prognostic model for hepatic-biliary-pancreatic cancers identified by integrative analyses.
    Article Snippet: Edited by Simon Rayner Hepatic, biliary and pancreatic cancers are a diverse set of malignancies with poor prognoses.. It is possible that common molecular mechanisms are involved in the carcinogenesis of these cancers.. Here, we identified LINC01537 and seven protein-coding genes by integrative analysis of transcriptomes of mRNAs, microRNAs and long non-coding RNAs from cholangiocarcinoma, hepatocellular carcinoma and pancreatic adenocarcinoma cohorts in TCGA.

    Article Title: Identification of small non-coding RNAs responsive to GUN1 and GUN5 related retrograde signals in Arabidopsis thaliana.
    Article Snippet: ATG accession numbers: GUN1 (AT2G31400), GUN5 (AT5G13630) The raw Illumina sRNA and mRNA/lncRNA sequencing data is deposited in NCBI SRA database with the ID PRJNA557616.

    Article Title: Pan-cancer clinical and molecular analysis of racial disparities
    Article Snippet: TCGA microRNA (miRNA) and long non-coding RNA (lncRNA) sequencing data used in the present study were analyzed on the Illumina HiSeq platform, whereas TCGA DNA methylation data were analyzed on the Illumina HM450k platform.

    Article Title: Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset
    Article Snippet: The synthetic metagenomics dataset was created using ART_Illumina, Q Version 2.5.8 ( ) and a number of EST (expressed sequence tag) and coding sequence data retrieved from the NCBI database (see ).

    Article Title: The Masquelet technique triggers the formation of a network involving LncRNA, circRNA, miRNA, and mRNA during bone repair
    Article Snippet: The whole-transcriptome sequencing data (including lncRNA, circRNA, miRNA, and mRNA) were obtained from two distinct groups using the Illumina Hiseq 4000 platform.

    Article Title: Identification of mRNA-miRNA-lncRNA regulatory network associated with the immune response to Aeromonas salmonicides infection in the black rockfish (Sebastes schlegelii).
    Article Snippet: In aquaculture, Aeromonas salmonicides (A. salmonicida) is a main fish pathogen because of its nearly worldwide distribution, and broad host range.. Recently, an increasing number of evidences have uncovered the roles of mRNA-miRNA-lncRNA network in fish diseases.. In current study, RNA-seq was conducted in the black rockfish spleen following A. salmonicida infection at 0 h (Sp0 or control) and three different post-infection time-points (2 h: Sp2, 12 h: Sp12 and 24 h: Sp24, respectively) to comprehensively identify differentially expressed (DE) mRNAs, miRNAs and lncRNAs.

    Article Title: A universal co‐expression gene network and prognostic model for hepatic–biliary–pancreatic cancers identified by integrative analyses
    Article Snippet: Level 3 RNA‐sequencing (RNA‐seq) count data (mRNA and lncRNA; Illumina HiSeq RNA‐seq platform; Illumina, San Diego, CA, USA) and miRNA‐sequencing (miRNA‐seq) count data (Illumina HiSeq miRNA‐Seq platform), as well as their corresponding clinical phenotypic data and survival information, were obtained from the GDC Data Portal ( https://portal.gdc.cancer.gov ) [ ].

    Article Title: DNMBP-AS1/hsa-miR-30a-5p/PGC1α axis suppresses tumor progression of colorectal cancer by inhibiting PKM2-mediated Warburg effect and enhance anti-PD-1 therapy efficacy.
    Article Snippet: For additional data, we accessed RNA sequence data (lncRNA and mRNA, level 3; Illumina HiSeq RNA-Seq platform), miRNA sequence data (Illumina HiSeq miRNASeq platform), and relevant clinical information of CRC patients from the TCGA database.

    Control:

    Article Title: A universal co-expression gene network and prognostic model for hepatic-biliary-pancreatic cancers identified by integrative analyses.
    Article Snippet: Edited by Simon Rayner Hepatic, biliary and pancreatic cancers are a diverse set of malignancies with poor prognoses.. It is possible that common molecular mechanisms are involved in the carcinogenesis of these cancers.. Here, we identified LINC01537 and seven protein-coding genes by integrative analysis of transcriptomes of mRNAs, microRNAs and long non-coding RNAs from cholangiocarcinoma, hepatocellular carcinoma and pancreatic adenocarcinoma cohorts in TCGA.

    Article Title: Identification of small non-coding RNAs responsive to GUN1 and GUN5 related retrograde signals in Arabidopsis thaliana.
    Article Snippet: ATG accession numbers: GUN1 (AT2G31400), GUN5 (AT5G13630) The raw Illumina sRNA and mRNA/lncRNA sequencing data is deposited in NCBI SRA database with the ID PRJNA557616.

    Article Title: Pan-cancer clinical and molecular analysis of racial disparities
    Article Snippet: TCGA microRNA (miRNA) and long non-coding RNA (lncRNA) sequencing data used in the present study were analyzed on the Illumina HiSeq platform, whereas TCGA DNA methylation data were analyzed on the Illumina HM450k platform.

    Article Title: Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset
    Article Snippet: The synthetic metagenomics dataset was created using ART_Illumina, Q Version 2.5.8 ( ) and a number of EST (expressed sequence tag) and coding sequence data retrieved from the NCBI database (see ).

    Article Title: The Masquelet technique triggers the formation of a network involving LncRNA, circRNA, miRNA, and mRNA during bone repair
    Article Snippet: The whole-transcriptome sequencing data (including lncRNA, circRNA, miRNA, and mRNA) were obtained from two distinct groups using the Illumina Hiseq 4000 platform.

    Article Title: Identification of mRNA-miRNA-lncRNA regulatory network associated with the immune response to Aeromonas salmonicides infection in the black rockfish (Sebastes schlegelii).
    Article Snippet: In aquaculture, Aeromonas salmonicides (A. salmonicida) is a main fish pathogen because of its nearly worldwide distribution, and broad host range.. Recently, an increasing number of evidences have uncovered the roles of mRNA-miRNA-lncRNA network in fish diseases.. In current study, RNA-seq was conducted in the black rockfish spleen following A. salmonicida infection at 0 h (Sp0 or control) and three different post-infection time-points (2 h: Sp2, 12 h: Sp12 and 24 h: Sp24, respectively) to comprehensively identify differentially expressed (DE) mRNAs, miRNAs and lncRNAs.

    Article Title: A universal co‐expression gene network and prognostic model for hepatic–biliary–pancreatic cancers identified by integrative analyses
    Article Snippet: Level 3 RNA‐sequencing (RNA‐seq) count data (mRNA and lncRNA; Illumina HiSeq RNA‐seq platform; Illumina, San Diego, CA, USA) and miRNA‐sequencing (miRNA‐seq) count data (Illumina HiSeq miRNA‐Seq platform), as well as their corresponding clinical phenotypic data and survival information, were obtained from the GDC Data Portal ( https://portal.gdc.cancer.gov ) [ ].

    Article Title: DNMBP-AS1/hsa-miR-30a-5p/PGC1α axis suppresses tumor progression of colorectal cancer by inhibiting PKM2-mediated Warburg effect and enhance anti-PD-1 therapy efficacy.
    Article Snippet: For additional data, we accessed RNA sequence data (lncRNA and mRNA, level 3; Illumina HiSeq RNA-Seq platform), miRNA sequence data (Illumina HiSeq miRNASeq platform), and relevant clinical information of CRC patients from the TCGA database.

    DNA Methylation Assay:

    Article Title: A universal co-expression gene network and prognostic model for hepatic-biliary-pancreatic cancers identified by integrative analyses.
    Article Snippet: Edited by Simon Rayner Hepatic, biliary and pancreatic cancers are a diverse set of malignancies with poor prognoses.. It is possible that common molecular mechanisms are involved in the carcinogenesis of these cancers.. Here, we identified LINC01537 and seven protein-coding genes by integrative analysis of transcriptomes of mRNAs, microRNAs and long non-coding RNAs from cholangiocarcinoma, hepatocellular carcinoma and pancreatic adenocarcinoma cohorts in TCGA.

    Article Title: Identification of small non-coding RNAs responsive to GUN1 and GUN5 related retrograde signals in Arabidopsis thaliana.
    Article Snippet: ATG accession numbers: GUN1 (AT2G31400), GUN5 (AT5G13630) The raw Illumina sRNA and mRNA/lncRNA sequencing data is deposited in NCBI SRA database with the ID PRJNA557616.

    Article Title: Pan-cancer clinical and molecular analysis of racial disparities
    Article Snippet: TCGA microRNA (miRNA) and long non-coding RNA (lncRNA) sequencing data used in the present study were analyzed on the Illumina HiSeq platform, whereas TCGA DNA methylation data were analyzed on the Illumina HM450k platform.

    Article Title: Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset
    Article Snippet: The synthetic metagenomics dataset was created using ART_Illumina, Q Version 2.5.8 ( ) and a number of EST (expressed sequence tag) and coding sequence data retrieved from the NCBI database (see ).

    Article Title: The Masquelet technique triggers the formation of a network involving LncRNA, circRNA, miRNA, and mRNA during bone repair
    Article Snippet: The whole-transcriptome sequencing data (including lncRNA, circRNA, miRNA, and mRNA) were obtained from two distinct groups using the Illumina Hiseq 4000 platform.

    Article Title: Identification of mRNA-miRNA-lncRNA regulatory network associated with the immune response to Aeromonas salmonicides infection in the black rockfish (Sebastes schlegelii).
    Article Snippet: In aquaculture, Aeromonas salmonicides (A. salmonicida) is a main fish pathogen because of its nearly worldwide distribution, and broad host range.. Recently, an increasing number of evidences have uncovered the roles of mRNA-miRNA-lncRNA network in fish diseases.. In current study, RNA-seq was conducted in the black rockfish spleen following A. salmonicida infection at 0 h (Sp0 or control) and three different post-infection time-points (2 h: Sp2, 12 h: Sp12 and 24 h: Sp24, respectively) to comprehensively identify differentially expressed (DE) mRNAs, miRNAs and lncRNAs.

    Article Title: A universal co‐expression gene network and prognostic model for hepatic–biliary–pancreatic cancers identified by integrative analyses
    Article Snippet: Level 3 RNA‐sequencing (RNA‐seq) count data (mRNA and lncRNA; Illumina HiSeq RNA‐seq platform; Illumina, San Diego, CA, USA) and miRNA‐sequencing (miRNA‐seq) count data (Illumina HiSeq miRNA‐Seq platform), as well as their corresponding clinical phenotypic data and survival information, were obtained from the GDC Data Portal ( https://portal.gdc.cancer.gov ) [ ].

    Article Title: DNMBP-AS1/hsa-miR-30a-5p/PGC1α axis suppresses tumor progression of colorectal cancer by inhibiting PKM2-mediated Warburg effect and enhance anti-PD-1 therapy efficacy.
    Article Snippet: For additional data, we accessed RNA sequence data (lncRNA and mRNA, level 3; Illumina HiSeq RNA-Seq platform), miRNA sequence data (Illumina HiSeq miRNASeq platform), and relevant clinical information of CRC patients from the TCGA database.



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